Fan theories and alternative scenarios. 1. Dooku is the good guy. An alternative scenario could have the same events shown in the preludes but with Dooku starting a rebellion to overthrow Darth Sidious. Dooku hopes to give the Jedi the opportunity to assume governorship of the Republic. It is for this reason that he kidnaps Palpatine. The clone army was simply ordered in secret by Palpatine, who later lets slip to Anakin that there may be "unexpected aid" on a distant planet unknown to the Jedi i.e., said clone army. 2. Padme seduces Anakin so the Jedi Order will survive through their children. He basically marries her for religious/traditional reasons. 3. Similarly, it was planned that, if Kenobi and Qui-Gonn were stranded on Tatooine, they would have Jedi children with Padme and Shmi. This is for the same reasons as 2, or to produce an alternative (or "spare") Jedi Order in case the original were ever to be corrupted or eliminated. 4. Padme is be...